1. Cui X, Zhang C, Fu C, Hu J, Li T, Li L. YY1 is involved in homologous recombination inhibition at guanine quadruplex sites in human cells. Nucleic Acids Res. 2024 Jun 13:gkae502. doi: 10.1093/nar/gkae502. Epub ahead of print. PMID: 38869071.
2. Yin J, Qi TF, Li L, Wang Y. Targeted Profiling of Epitranscriptomic Reader, Writer, and Eraser Proteins Regulated by H3K36me3. Anal Chem. 2023 Jun 27;95(25):9672-9679. doi: 10.1021/acs.analchem.3c01552. Epub 2023 Jun 9. PMID: 37296074; PMCID: PMC10372775.
3. Tan Y, Wu J, Clabaugh G, Li L, Du H, Wang Y. Size- and Stereochemistry-Dependent Transcriptional Bypass of DNA Alkyl Phosphotriester Adducts in Mammalian Cells. DNA (Basel). 2022 Dec;2(4):221-230. doi: 10.3390/dna2040016. Epub 2022 Oct 5.
4. Mondal S, Ramanathan M, Miao W, Meyers RM, Rao D, Lopez-Pajares V, Siprashvili Z, Reynolds DL, Porter DF, Ferguson I, Neela P, Zhao Y, Meservey LM, Guo M, Yang YY, Li L, Wang Y, Khavari PA. PROBER identifies proteins associated with programmable sequence-specific DNA in living cells. Nat Methods. 2022 Aug;19(8):959-968. doi: 10.1038/s41592-022-01552-w. Epub 2022 Aug 4.
5. Chen JJ, You XJ, Li L, Xie NB, Ding JH, Yuan BF, Feng YQ. Single-Base Resolution Detection of Adenosine-to-Inosine RNA Editing by Endonuclease-Mediated Sequencing. Anal Chem. 2022 Jun 21;94(24):8740-8747. doi: 10.1021/acs.analchem.2c01226. Epub 2022 Jun 9.
6. Guo S, Li L, Yu K, Tan Y, Wang Y. LC-MS/MS for Assessing the Incorporation and Repair of N(2)-Alkyl-2'-deoxyguanosine in Genomic DNA. Chem Res Toxicol. 2022 Oct 17;35(10):1814-1820. doi: 10.1021/acs.chemrestox.2c00101. Epub 2022 May 18.
7. Ma CJ, Li L, Shao WX, Ding JH, Cai XL, Lun ZR, Yuan BF, Feng YQ. An enzyme-mediated bioorthogonal labeling method for genome-wide mapping of 5-hydroxymethyluracil. Chem Sci. 2021 Oct 4;12(42):14126-14132. doi: 10.1039/d1sc03812e. eCollection 2021 Nov 3.
8. Gao Z, Williams P, Li L, Wang Y. A Quantitative Proteomic Approach for the Identification of DNA Guanine Quadruplex-Binding Proteins. J Proteome Res. 2021 Nov 5;20(11):4919-4924. doi: 10.1021/acs.jproteome.1c00603. Epub 2021 Sep 27.
9. Tan Y, Guo S, Wu J, Du H, Li L, You C, Wang Y. DNA Polymerase η Promotes the Transcriptional Bypass of N(2)-Alkyl-2'-deoxyguanosine Adducts in Human Cells. J Am Chem Soc. 2021 Oct 6;143(39):16197-16205. doi: 10.1021/jacs.1c07374. Epub 2021 Sep 23.
10. Liu X, Yuan J, Zhang X, Li L, Dai X, Chen Q, Wang Y. ATF3 Modulates the Resistance of Breast Cancer Cells to Tamoxifen through an N(6)-Methyladenosine-Based Epitranscriptomic Mechanism. Chem Res Toxicol. 2021 Jul 19;34(7):1814-1821. doi: 10.1021/acs.chemrestox.1c00206. Epub 2021 Jul 2.
11. Bade D, Cai Q, Li L, Yu K, Dai X, Miao W, Wang Y. Modulation of N-terminal methyltransferase 1 by an N(6)-methyladenosine-based epitranscriptomic mechanism. Biochem Biophys Res Commun. 2021 Mar 26;546:54-58. doi: 10.1016/j.bbrc.2021.01.088. Epub 2021 Feb 6.
12. Li L, Williams P, Gao Z, Wang Y. VEZF1-guanine quadruplex DNA interaction regulates alternative polyadenylation and detyrosinase activity of VASH1. Nucleic Acids Res. 2020 Dec 2;48(21):11994-12003. doi: 10.1093/nar/gkaa1092.
13. Li L, Williams P, Ren W, Wang MY, Gao Z, Miao W, Huang M, Song J, Wang Y. YY1 interacts with guanine quadruplexes to regulate DNA looping and gene expression. Nat Chem Biol. 2021 Feb;17(2):161-168. doi: 10.1038/s41589-020-00695-1. Epub 2020 Nov 16.
14. Liu X, Gonzalez G, Dai X, Miao W, Yuan J, Huang M, Bade D, Li L, Sun Y, Wang Y. Adenylate Kinase 4 Modulates the Resistance of Breast Cancer Cells to Tamoxifen through an m(6)A-Based Epitranscriptomic Mechanism. Mol Ther. 2020 Dec 2;28(12):2593-2604. doi: 10.1016/j.ymthe.2020.09.007. Epub 2020 Sep 5.
15. Yang YY, Yu K, Li L, Huang M, Wang Y. Proteome-wide Interrogation of Small GTPases Regulated by N(6)-Methyladenosine Modulators. Anal Chem. 2020 Jul 21;92(14):10145-10152. doi: 10.1021/acs.analchem.0c02203. Epub 2020 Jul 7.
16. Qi TF, Guo L, Huang M, Li L, Miao W, Wang Y. Discovery of TBC1D7 as a Potential Driver for Melanoma Cell Invasion. Proteomics. 2020 Jul;20(14):e1900347. doi: 10.1002/pmic.201900347. Epub 2020 Jul 2.
17. Miao W, Li L, Liu X, Qi TF, Guo L, Huang M, Wang Y. A Targeted Quantitative Proteomic Method Revealed a Substantial Reprogramming of Kinome during Melanoma Metastasis. Sci Rep. 2020 Feb 12;10(1):2485. doi: 10.1038/s41598-020-59572-5.
18. Dai X, Gonzalez G, Li L, Li J, You C, Miao W, Hu J, Fu L, Zhao Y, Li R, Li L, Chen X, Xu Y, Gu W, Wang Y. YTHDF2 Binds to 5-Methylcytosine in RNA and Modulates the Maturation of Ribosomal RNA. Anal Chem. 2020 Jan 7;92(1):1346-1354. doi: 10.1021/acs.analchem.9b04505. Epub 2019 Dec 23.
19. Liu X, Miao W, Huang M, Li L, Dai X, Wang Y. Elevated Hexokinase II Expression Confers Acquired Resistance to 4-Hydroxytamoxifen in Breast Cancer Cells. Mol Cell Proteomics. 2019 Nov;18(11):2273-2284. doi: 10.1074/mcp.RA119.001576. Epub 2019 Sep 13.
20. Miao W, Li L, Wang Y. High-Throughput Targeted Quantitative Analysis of the Interaction between HSP90 and Kinases. Anal Chem. 2019 Sep 17;91(18):11507-11509. doi: 10.1021/acs.analchem.9b03320. Epub 2019 Sep 4.
21. Miao W, Li L, Zhao Y, Dai X, Chen X, Wang Y. HSP90 inhibitors stimulate DNAJB4 protein expression through a mechanism involving N(6)-methyladenosine. Nat Commun. 2019 Aug 9;10(1):3613. doi: 10.1038/s41467-019-11552-8.
22. Wu J, Du H, Li L, Price NE, Liu X, Wang Y. The Impact of Minor-Groove N(2)-Alkyl-2'-deoxyguanosine Lesions on DNA Replication in Human Cells. ACS Chem Biol. 2019 Aug 16;14(8):1708-1716. doi: 10.1021/acschembio.9b00129. Epub 2019 Aug 1.
23. Li L, Miao W, Williams P, Guo C, Wang Y. SLIRP Interacts with Helicases to Facilitate 2'-O-Methylation of rRNA and to Promote Translation. J Am Chem Soc. 2019 Jul 17;141(28):10958-10961. doi: 10.1021/jacs.9b04424. Epub 2019 Jul 3.
24. Miao W, Yuan J, Li L, Wang Y. Parallel-Reaction-Monitoring-Based Proteome-Wide Profiling of Differential Kinase Protein Expression during Prostate Cancer Metastasis in Vitro. Anal Chem. 2019 Aug 6;91(15):9893-9900. doi: 10.1021/acs.analchem.9b01561. Epub 2019 Jul 10.
25. Du H, Wang P, Li L, Wang Y. Repair and translesion synthesis of O(6)-alkylguanine DNA lesions in human cells. J Biol Chem. 2019 Jul 19;294(29):11144-11153. doi: 10.1074/jbc.RA119.009054. Epub 2019 Jun 5.
26. Tang F, Liu S, Li QY, Yuan J, Li L, Wang Y, Yuan BF, Feng YQ. Location analysis of 8-oxo-7,8-dihydroguanine in DNA by polymerase-mediated differential coding. Chem Sci. 2019 Mar 11;10(15):4272-4281. doi: 10.1039/c8sc04946g. eCollection 2019 Apr 21.
27. Su Y, Ghodke PP, Egli M, Li L, Wang Y, Guengerich FP. Human DNA polymerase η has reverse transcriptase activity in cellular environments. J Biol Chem. 2019 Apr 12;294(15):6073-6081. doi: 10.1074/jbc.RA119.007925. Epub 2019 Mar 6.
28. Du H, Wang P, Li L, Amato NJ, Wang Y. Cytotoxic and Mutagenic Properties of C1' and C3'-Epimeric Lesions of 2'-Deoxyribonucleosides in Human Cells. ACS Chem Biol. 2019 Mar 15;14(3):478-485. doi: 10.1021/acschembio.8b01126. Epub 2019 Feb 25.
29. Li L, Miao W, Huang M, Williams P, Wang Y. Integrated Genomic and Proteomic Analyses Reveal Novel Mechanisms of the Methyltransferase SETD2 in Renal Cell Carcinoma Development. Mol Cell Proteomics. 2019 Mar;18(3):437-447. doi: 10.1074/mcp.RA118.000957. Epub 2018 Nov 28.
30. Chen X, Li L, Xu B, Zhao S, Lu P, He Y, Ye T, Feng YQ, Wu Y. Phosphatidylinositol-specific phospholipase C2 functions in auxin-modulated root development. Plant Cell Environ. 2019 May;42(5):1441-1457. doi: 10.1111/pce.13492. Epub 2018 Dec 11.
31. Miao W, Li L, Wang Y. Identification of Helicase Proteins as Clients for HSP90. Anal Chem. 2018 Oct 16;90(20):11751-11755. doi: 10.1021/acs.analchem.8b03142. Epub 2018 Sep 26.
32. Huang M, Qi TF, Li L, Zhang G, Wang Y. A Targeted Quantitative Proteomic Approach Assesses the Reprogramming of Small GTPases during Melanoma Metastasis. Cancer Res. 2018 Sep 15;78(18):5431-5445. doi: 10.1158/0008-5472.CAN-17-3811. Epub 2018 Aug 2.
33. Du H, Leng J, Wang P, Li L, Wang Y. Impact of tobacco-specific nitrosamine-derived DNA adducts on the efficiency and fidelity of DNA replication in human cells. J Biol Chem. 2018 Jul 13;293(28):11100-11108. doi: 10.1074/jbc.RA118.003477. Epub 2018 May 22.
34. Miao W, Li L, Wang Y. A Targeted Proteomic Approach for Heat Shock Proteins Reveals DNAJB4 as a Suppressor for Melanoma Metastasis. Anal Chem. 2018 Jun 5;90(11):6835-6842. doi: 10.1021/acs.analchem.8b00986. Epub 2018 May 11.
35. Wu J, Wang P, Li L, You C, Wang Y. Cytotoxic and mutagenic properties of minor-groove O(2)-alkylthymidine lesions in human cells. J Biol Chem. 2018 Jun 1;293(22):8638-8644. doi: 10.1074/jbc.RA118.003133. Epub 2018 Apr 23.
36. Williams P, Li L, Dong X, Wang Y. Identification of SLIRP as a G Quadruplex-Binding Protein. J Am Chem Soc. 2017 Sep 13;139(36):12426-12429. doi: 10.1021/jacs.7b07563. Epub 2017 Sep 5.
37. Tam LM, Jiang J, Wang P, Li L, Miao W, Dong X, Wang Y. Arsenite Binds to the Zinc Finger Motif of TIP60 Histone Acetyltransferase and Induces Its Degradation via the 26S Proteasome. Chem Res Toxicol. 2017 Sep 18;30(9):1685-1693. doi: 10.1021/acs.chemrestox.7b00146. Epub 2017 Sep 7.
38. Liu Y, Perez L, Gill AD, Mettry M, Li L, Wang Y, Hooley RJ, Zhong W. Site-Selective Sensing of Histone Methylation Enzyme Activity via an Arrayed Supramolecular Tandem Assay. J Am Chem Soc. 2017 Aug 16;139(32):10964-10967. doi: 10.1021/jacs.7b05002. Epub 2017 Aug 8.
39. Li L, Wang Y. Cross-talk between the H3K36me3 and H4K16ac histone epigenetic marks in DNA double-strand break repair. J Biol Chem. 2017 Jul 14;292(28):11951-11959. doi: 10.1074/jbc.M117.788224. Epub 2017 May 25.
40. Jiang J, Bellani M, Li L, Wang P, Seidman MM, Wang Y. Arsenite Binds to the RING Finger Domain of FANCL E3 Ubiquitin Ligase and Inhibits DNA Interstrand Crosslink Repair. ACS Chem Biol. 2017 Jul 21;12(7):1858-1866. doi: 10.1021/acschembio.6b01135. Epub 2017 Jun 1.
41. Wu J, Wang P, Li L, Williams NL, Ji D, Zahurancik WJ, You C, Wang J, Suo Z, Wang Y. Replication studies of carboxymethylated DNA lesions in human cells. Nucleic Acids Res. 2017 Jul 7;45(12):7276-7284. doi: 10.1093/nar/gkx442.
42. Price NE, Li L, Gates KS, Wang Y. Replication and repair of a reduced 2΄-deoxyguanosine-abasic site interstrand cross-link in human cells. Nucleic Acids Res. 2017 Jun 20;45(11):6486-6493. doi: 10.1093/nar/gkx266.
43. Wu J, Li L, Wang P, You C, Williams NL, Wang Y. Translesion synthesis of O4-alkylthymidine lesions in human cells. Nucleic Acids Res. 2016 Nov 2;44(19):9256-9265. doi: 10.1093/nar/gkw662. Epub 2016 Jul 27.
44. Zhao S, Wu Y, He Y, Wang Y, Xiao J, Li L, Wang Y, Chen X, Xiong W, Wu Y. RopGEF2 is involved in ABA-suppression of seed germination and post-germination growth of Arabidopsis. Plant J. 2015 Dec;84(5):886-99. doi: 10.1111/tpj.13046. Epub 2015 Nov 11.
45. Liu S, Jiang J, Li L, Amato NJ, Wang Z, Wang Y. Arsenite Targets the Zinc Finger Domains of Tet Proteins and Inhibits Tet-Mediated Oxidation of 5-Methylcytosine. Environ Sci Technol. 2015 Oct 6;49(19):11923-31. doi: 10.1021/acs.est.5b03386. Epub 2015 Sep 23.
46. Li L, He Y, Wang Y, Zhao S, Chen X, Ye T, Wu Y, Wu Y. Arabidopsis PLC2 is involved in auxin-modulated reproductive development. Plant J. 2015 Nov;84(3):504-15. doi: 10.1111/tpj.13016.
47. Zhang ZM, Rothbart SB, Allison DF, Cai Q, Harrison JS, Li L, Wang Y, Strahl BD, Wang GG, Song J. An Allosteric Interaction Links USP7 to Deubiquitination and Chromatin Targeting of UHRF1. Cell Rep. 2015 Sep 1;12(9):1400-6. doi: 10.1016/j.celrep.2015.07.046. Epub 2015 Aug 20.
48. Wang Y, Li L, Ye T, Lu Y, Chen X, Wu Y. The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis. J Exp Bot. 2013 Jan;64(2):675-84. doi: 10.1093/jxb/ers361.
49. Wang Y, Li L, Ye T, Zhao S, Liu Z, Feng YQ, Wu Y. Cytokinin antagonizes ABA suppression to seed germination of Arabidopsis by downregulating ABI5 expression. Plant J. 2011 Oct;68(2):249-61. doi: 10.1111/j.1365-313X.2011.04683.x. Epub 2011 Jul 26.
